A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2738777



Internal ID9973118
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr9:93010079..93010987hg38UCSC Ensembl
Outerchr9:95772361..95773269hg19UCSC Ensembl
Cytoband9q22.31
Allele length
AssemblyAllele length
hg38909
hg19909
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6787290, essv6791387, essv6890894, essv6716312, essv6894260, essv6900308, essv6803175, essv6731663, essv6965041, essv6795568, essv6681171, essv6842006, essv6767898, essv6931336, essv6823196, essv6809040, essv6724064, essv6693709, essv6876325, essv6952753, essv6727899, essv6976282, essv6815071, essv6884794, essv6771615, essv6802243, essv6927532, essv6970284, essv6775295, essv6895120, essv6935616, essv6806046, essv6882004, essv6698459, essv6856490, essv6915746, essv6850476, essv6779011, essv6768162, essv6684510, essv6834496, essv6958463, essv6923848, essv6831642, essv6667985, essv6919688, essv6897323, essv6967729, essv6944405
SamplesSSM100, SSM008, SSM071, SSM027, SSM075, SSM045, SSM046, SSM064, SSM079, SSM065, SSM087, SSM038, SSM097, SSM009, SSM073, SSM074, SSM023, SSM028, SSM092, SSM084, SSM021, SSM047, SSM018, SSM069, SSM029, SSM026, SSM017, SSM019, SSM094, SSM067, SSM001, SSM086, SSM033, SSM066, SSM082, SSM020, SSM016, SSM005, SSM077, SSM010, SSM070, SSM095, SSM025, SSM004, SSM099, SSM043, SSM098, SSM030, SSM012
Known GenesFGD3
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2738777
Frequency
Sample Size96
Observed Gain0
Observed Loss49
Observed Complex0
Frequencyn/a


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