Variant Details

Variant: esv2738750

Internal ID

9973091

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Outer	chr9:90861050..90862031	hg38	UCSC Ensembl
Outer	chr9:93623332..93624313	hg19	UCSC Ensembl

Cytoband

9q22.2

Allele length

Assembly	Allele length
hg38	982
hg19	982

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv6952749, essv6735054, essv6731660, essv6944400, essv6912135, essv6767876, essv6803172, essv6939869, essv6927526, essv6976278, essv6791383, essv6672417, essv6904493, essv6771611, essv6895065, essv6908416, essv6724059, essv6815067, essv6677373, essv6795563, essv6779006, essv6712608, essv6958456, essv6695055, essv6931331, essv6948589, essv6862076, essv6850472, essv6783053, essv6701967, essv6709134, essv6787285, essv6720261, essv6760643, essv6809036, essv6799751, essv6681168, essv6687925, essv6923844, essv6752224, essv6935251, essv6845605, essv6970280, essv6965035, essv6827249, essv6834493, essv6838200, essv6716308, essv6705801, essv6823195, essv6919686, essv6879183, essv6935613, essv6894257, essv6856485

Samples

SSM008, SSM083, SSM071, SSM027, SSM024, SSM075, SSM045, SSM011, SSM079, SSM065, SSM087, SSM039, SSM013, SSM073, SSM093, SSM042, SSM041, SSM057, SSM023, SSM028, SSM021, SSM047, SSM018, SSM069, SSM061, SSM029, SSM026, SSM017, SSM019, SSM035, SSM032, SSM003, SSM031, SSM067, SSM044, SSM014, SSM086, SSM033, SSM085, SSM068, SSM040, SSM072, SSM082, SSM020, SSM007, SSM015, SSM080, SSM037, SSM077, SSM022, SSM070, SSM025, SSM043, SSM098, SSM012

Known Genes

SYK

Method

Sequencing

Analysis

Breakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads

Platform

Illumina HiSeq 2000

Comments

Reference

Wong_et_al_2012b

Pubmed ID

23290073

Accession Number(s)

esv2738750

Frequency

Sample Size	96
Observed Gain	0
Observed Loss	55
Observed Complex	0
Frequency	n/a