A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2738750



Internal ID9973091
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr9:90861050..90862031hg38UCSC Ensembl
Outerchr9:93623332..93624313hg19UCSC Ensembl
Cytoband9q22.2
Allele length
AssemblyAllele length
hg38982
hg19982
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6958456, essv6803172, essv6677373, essv6845605, essv6894257, essv6701967, essv6908416, essv6716308, essv6919686, essv6712608, essv6895065, essv6904493, essv6705801, essv6695055, essv6823195, essv6850472, essv6709134, essv6965035, essv6827249, essv6767876, essv6944400, essv6862076, essv6783053, essv6752224, essv6681168, essv6771611, essv6970280, essv6912135, essv6935251, essv6935613, essv6687925, essv6939869, essv6931331, essv6856485, essv6952749, essv6720261, essv6672417, essv6948589, essv6923844, essv6735054, essv6779006, essv6787285, essv6760643, essv6927526, essv6809036, essv6838200, essv6815067, essv6724059, essv6731660, essv6795563, essv6799751, essv6834493, essv6879183, essv6791383, essv6976278
SamplesSSM065, SSM022, SSM007, SSM027, SSM013, SSM082, SSM086, SSM033, SSM061, SSM042, SSM040, SSM043, SSM031, SSM035, SSM025, SSM072, SSM020, SSM071, SSM057, SSM032, SSM039, SSM024, SSM045, SSM067, SSM083, SSM041, SSM077, SSM012, SSM093, SSM085, SSM017, SSM011, SSM028, SSM029, SSM003, SSM047, SSM073, SSM069, SSM021, SSM037, SSM087, SSM019, SSM023, SSM079, SSM068, SSM044, SSM075, SSM015, SSM026, SSM014, SSM008, SSM098, SSM018, SSM070, SSM080
Known GenesSYK
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2738750
Frequency
Sample Size96
Observed Gain0
Observed Loss55
Observed Complex0
Frequencyn/a


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