A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2738411



Internal ID10322047
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr9:35803093..35803417hg38UCSC Ensembl
Outerchr9:35803090..35803414hg19UCSC Ensembl
Cytoband9p13.3
Allele length
AssemblyAllele length
hg38325
hg19325
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6850400, essv6819107, essv6727851, essv6964967, essv6879147, essv6811870, essv6908371, essv6677327, essv6861785, essv6799700, essv6827205, essv6803134, essv6823152, essv6701924, essv6672344, essv6838164, essv6778972, essv6948559, essv6687893, essv6887627, essv6900274, essv6787234
SamplesSSM100, SSM083, SSM027, SSM024, SSM046, SSM079, SSM039, SSM073, SSM093, SSM088, SSM069, SSM096, SSM035, SSM032, SSM031, SSM067, SSM014, SSM086, SSM072, SSM078, SSM080, SSM076
Known GenesNPR2
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2738411
Frequency
Sample Size96
Observed Gain0
Observed Loss22
Observed Complex0
Frequencyn/a


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