A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2737756



Internal ID9972095
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr8:140419230..141917755hg38UCSC Ensembl
Outerchr8:141429329..142999116hg19UCSC Ensembl
Cytoband8q24.3
Allele length
AssemblyAllele length
hg381498526
hg191569788
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6775211, essv6958286, essv6944288, essv6727800, essv6799631, essv6850307, essv6866447, essv6935499, essv6805972, essv6850310, essv6919592, essv6952656, essv6681076, essv6905085, essv6791272, essv6716226, essv6970172, essv6894221, essv6712515, essv6894199, essv6838095, essv6778906, essv6876257, essv6707909, essv6834412, essv6677269, essv6861721, essv6720162, essv6684620, essv6705716, essv6801521, essv6976116, essv6677272, essv6827140, essv6727803, essv6672244, essv6731568, essv6944287, essv6866446, essv6723955, essv6904404, essv6908324, essv6927445, essv6746440, essv6701852, essv6765449, essv6691128, essv6688043, essv6701853, essv6964872, essv6743639, essv6927447, essv6778904, essv6976115, essv6915666, essv6771526, essv6856332, essv6838096, essv6743638, essv6720166, essv6931234, essv6716223, essv6681075, essv6964875, essv6866441, essv6723957, essv6795451, essv6831065, essv6667942, essv6841915, essv6879110, essv6856333, essv6900229, essv6684622, essv6830807, essv6912036, essv6795448, essv6964877, essv6866449, essv6904406, essv6870338, essv6952655, essv6841918, essv6814972, essv6752161, essv6861320, essv6672237, essv6694951, essv6958280, essv6894210, essv6861722, essv6767142, essv6819040, essv6720163, essv6716227, essv6939771, essv6912038, essv6827139, essv6795449, essv6958282, essv6894165, essv6850311, essv6870337, essv6958279, essv6976114, essv6683843, essv6749274, essv6923740, essv6915665, essv6808961, essv6757875, essv6716222, essv6801532, essv6799629, essv6775212, essv6958278, essv6823090, essv6923738, essv6970168, essv6850312, essv6720160, essv6948508, essv6876258, essv6879108, essv6791270, essv6723953, essv6694952, essv6866442, essv6705717, essv6727802, essv6782962, essv6723952, essv6694949, essv6935501, essv6763044, essv6720159, essv6838097, essv6931235, essv6908321, essv6890814, essv6834411, essv6705715, essv6723956, essv6894169, essv6919591, essv6841917, essv6734836, essv6919593, essv6845531, essv6919594, essv6723950, essv6908320, essv6716225, essv6944286, essv6787169, essv6894167, essv6931237, essv6887581, essv6709041, essv6795447, essv6970171, essv6740594, essv6823089, essv6731566, essv6866448, essv6771529, essv6687856, essv6958283, essv6768082, essv6823086, essv6948506, essv6970167, essv6948509, essv6866445, essv6934473, essv6814971, essv6731567, essv6912037, essv6958281, essv6743640, essv6709044, essv6958284, essv6948504, essv6707932, essv6683832, essv6861331, essv6970169, essv6834413, essv6964870, essv6952653, essv6838101, essv6771527, essv6778905, essv6723951, essv6782960, essv6935500, essv6720164, essv6782958, essv6964874, essv6952657, essv6904405, essv6672238, essv6939772, essv6935498, essv6939767, essv6861719, essv6782959, essv6672241, essv6716224, essv6782963, essv6850308, essv6782961, essv6787170, essv6811834, essv6934462, essv6856334, essv6720161, essv6948505, essv6672240, essv6782966, essv6970170, essv6861723, essv6782964, essv6935502, essv6799628, essv6823087, essv6939770, essv6870339, essv6672242, essv6819041, essv6795445, essv6939769, essv6838100, essv6827138, essv6727801, essv6952654, essv6952658, essv6887582, essv6894168, essv6694950, essv6841916, essv6908323, essv6876255, essv6755110, essv6934451, essv6873300, essv6681074, essv6927446, essv6672236, essv6923739, essv6927448, essv6976119, essv6964876, essv6827141, essv6791271, essv6931236, essv6976118, essv6771528, essv6795446, essv6677271, essv6705718, essv6795450, essv6908322, essv6707920, essv6876256, essv6799630, essv6964871, essv6672239, essv6939768, essv6694953, essv6787171, essv6677270, essv6691129, essv6866444, essv6976120, essv6879111, essv6740595, essv6734837, essv6856330, essv6838099, essv6841920, essv6944289, essv6830806, essv6814970, essv6879107, essv6884733
SamplesSSM100, SSM059, SSM036, SSM008, SSM083, SSM071, SSM027, SSM024, SSM075, SSM045, SSM046, SSM011, SSM064, SSM079, SSM065, SSM087, SSM097, SSM039, SSM013, SSM009, SSM093, SSM074, SSM042, SSM088, SSM002, SSM041, SSM057, SSM023, SSM058, SSM028, SSM092, SSM084, SSM090, SSM021, SSM047, SSM018, SSM069, SSM029, SSM096, SSM062, SSM026, SSM089, SSM017, SSM019, SSM035, SSM032, SSM003, SSM031, SSM067, SSM044, SSM001, SSM014, SSM086, SSM033, SSM066, SSM006, SSM085, SSM068, SSM081, SSM040, SSM072, SSM082, SSM020, SSM015, SSM078, SSM016, SSM053, SSM005, SSM080, SSM037, SSM077, SSM076, SSM022, SSM010, SSM091, SSM055, SSM070, SSM095, SSM025, SSM034, SSM043, SSM052, SSM098, SSM049, SSM056, SSM030, SSM063, SSM012
Known GenesAGO2, CHRAC1, DENND3, GPR20, LOC731779, MROH5, PTK2, PTP4A3, SLC45A4, TRAPPC9
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2737756
Frequency
Sample Size96
Observed Gain0
Observed Loss88
Observed Complex0
Frequencyn/a


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