A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2736240



Internal ID9970572
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr10:46409110..46410486hg38UCSC Ensembl
Outerchr10:47139265..47140641hg19UCSC Ensembl
Cytoband10q11.22
Allele length
AssemblyAllele length
hg381377
hg191377
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6948738, essv6755287, essv6976568, essv6803258, essv6876423, essv6856702, essv6873448, essv6698533, essv6879270, essv6769043, essv6709238, essv6702113, essv6731796, essv6728022, essv6787438, essv6771765, essv6791524, essv6688038, essv6681292, essv6915858, essv6927666, essv6760725, essv6827382, essv6908542, essv6677510, essv6970453, essv6834609, essv6904621, essv6779149, essv6768258, essv6783227, essv6897415
SamplesSSM008, SSM024, SSM046, SSM064, SSM065, SSM087, SSM038, SSM039, SSM013, SSM073, SSM093, SSM041, SSM058, SSM028, SSM092, SSM047, SSM069, SSM061, SSM029, SSM019, SSM035, SSM032, SSM067, SSM014, SSM033, SSM068, SSM082, SSM016, SSM080, SSM091, SSM070, SSM099
Known GenesLINC00842
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2736240
Frequency
Sample Size96
Observed Gain0
Observed Loss32
Observed Complex0
Frequencyn/a


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