A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2736163



Internal ID9970495
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr10:46802558..48992343hg19UCSC Ensembl
Cytoband10q11.22
Allele length
AssemblyAllele length
hg192189786
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6948741, essv6728022, essv6958731, essv6803259, essv6970453, essv6795707, essv6879270, essv6873448, essv6890990, essv6976569, essv6819316, essv6948738, essv6827381, essv6856700, essv6724190, essv6763190, essv6799883, essv6831011, essv6702113, essv6755289, essv6958730, essv6698534, essv6701487, essv6685176, essv6695212, essv6863120, essv6948737, essv6819313, essv6927667, essv6768258, essv6856706, essv6720379, essv6838324, essv6803277, essv6702115, essv6827382, essv6838325, essv6811986, essv6787438, essv6894384, essv6919830, essv6944559, essv6915857, essv6842140, essv6684819, essv6915858, essv6908542, essv6695214, essv6799885, essv6803258, essv6919831, essv6695211, essv6900398, essv6845703, essv6904622, essv6681292, essv6720380, essv6724191, essv6856705, essv6890991, essv6677509, essv6688038, essv6731798, essv6856704, essv6850683, essv6728024, essv6815183, essv6861996, essv6861995, essv6952896, essv6965268, essv6779150, essv6908543, essv6752337, essv6908545, essv6958728, essv6948739, essv6709240, essv6819315, essv6896320, essv6677510, essv6856701, essv6698533, essv6760725, essv6819314, essv6924003, essv6771766, essv6787437, essv6866747, essv6834613, essv6856703, essv6783227, essv6791523, essv6731799, essv6791524, essv6906462, essv6976571, essv6684818, essv6702114, essv6709238, essv6787440, essv6944558, essv6705928, essv6672649, essv6842141, essv6838323, essv6931501, essv6935781, essv6976568, essv6691333, essv6677513, essv6904621, essv6749446, essv6890989, essv6783226, essv6688039, essv6734975, essv6740793, essv6890992, essv6866746, essv6769043, essv6834612, essv6795708, essv6936307, essv6876424, essv6672646, essv6976570, essv6870494, essv6939996, essv6861994, essv6827383, essv6752338, essv6783228, essv6834609, essv6897415, essv6799886, essv6879271, essv6771765, essv6779151, essv6970454, essv6705927, essv6755287, essv6896331, essv6944557, essv6695213, essv6787439, essv6970455, essv6823324, essv6887763, essv6912283, essv6688037, essv6795706, essv6806141, essv6965270, essv6968729, essv6672648, essv6927666, essv6927668, essv6698532, essv6712726, essv6935780, essv6894385, essv6672645, essv6731796, essv6968751, essv6900400, essv6908541, essv6720381, essv6728023, essv6799884, essv6958727, essv6850684, essv6976567, essv6769054, essv6882089, essv6834611, essv6915860, essv6684817, essv6709239, essv6850682, essv6884878, essv6935779, essv6968740, essv6809138, essv6779148, essv6856702, essv6915859, essv6965269, essv6672647, essv6884876, essv6965267, essv6873449, essv6866748, essv6931500, essv6779149, essv6863131, essv6884877, essv6958732, essv6882088, essv6677512, essv6896309, essv6897416, essv6908544, essv6691334, essv6709165, essv6876423, essv6924002, essv6958733, essv6760726, essv6668050, essv6740794, essv6887764
SamplesSSM065, SSM022, SSM027, SSM092, SSM013, SSM082, SSM086, SSM006, SSM036, SSM091, SSM033, SSM084, SSM061, SSM099, SSM042, SSM040, SSM078, SSM088, SSM089, SSM090, SSM064, SSM031, SSM035, SSM025, SSM072, SSM020, SSM071, SSM016, SSM057, SSM001, SSM032, SSM039, SSM024, SSM045, SSM067, SSM094, SSM083, SSM097, SSM041, SSM077, SSM062, SSM005, SSM012, SSM093, SSM100, SSM056, SSM085, SSM017, SSM009, SSM011, SSM028, SSM029, SSM003, SSM095, SSM030, SSM047, SSM073, SSM069, SSM021, SSM002, SSM037, SSM034, SSM087, SSM038, SSM046, SSM019, SSM096, SSM023, SSM079, SSM052, SSM068, SSM044, SSM074, SSM004, SSM075, SSM015, SSM026, SSM014, SSM049, SSM008, SSM098, SSM018, SSM076, SSM058, SSM081, SSM070, SSM080
Known GenesAGAP9, ANTXRL, ANTXRLP1, ANXA8, ANXA8L1, ANXA8L2, BMS1P1, BMS1P2, BMS1P5, BMS1P6, CTSLP2, FAM21B, FAM25B, FAM25C, FAM25G, FAM35BP, FAM35DP, FRMPD2P1, GDF10, GDF2, GLUD1P7, GPRIN2, HNRNPA1P33, LINC00842, LOC100996758, NPY4R, PTPN20A, PTPN20B, RBP3, SYT15, ZNF488
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2736163
Frequency
Sample Size96
Observed Gain0
Observed Loss87
Observed Complex0
Frequencyn/a


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