A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2735932



Internal ID10319568
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr7:158333861..158342529hg38UCSC Ensembl
Outerchr7:158126553..158135221hg19UCSC Ensembl
Cytoband7q36.3
Allele length
AssemblyAllele length
hg388669
hg198669
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv1163e201
Supporting Variantsessv6939471, essv6830590, essv6915450, essv6778660, essv6897081, essv6919327, essv6799341, essv6975567, essv6884551, essv6948261, essv6870130, essv6939470, essv6930918, essv6855864, essv6943943, essv6837863, essv6701551, essv6719857, essv6897082, essv6975568, essv6795126, essv6786875, essv6834185, essv6927220, essv6814717, essv6790981, essv6919330, essv6915448, essv6866125, essv6893938, essv6715959, essv6715961, essv6802899, essv6919326, essv6799345, essv6834182, essv6876066, essv6795125, essv6935199, essv6799344, essv6887367, essv6694672, essv6870129, essv6802897, essv6778659, essv6771251, essv6705450, essv6893936, essv6727564, essv6671772, essv6782655, essv6790979, essv6969865, essv6822841, essv6964806, essv6811659, essv6915449, essv6731301, essv6740355, essv6771252, essv6805793, essv6964795, essv6939472, essv6849818, essv6915452, essv6723672, essv6893937, essv6923499, essv6799342, essv6731302, essv6957744, essv6681933, essv6826861, essv6943942, essv6952360, essv6767880, essv6952362
SamplesSSM083, SSM071, SSM024, SSM045, SSM046, SSM064, SSM079, SSM065, SSM087, SSM039, SSM073, SSM074, SSM023, SSM028, SSM092, SSM090, SSM021, SSM047, SSM018, SSM069, SSM029, SSM096, SSM026, SSM089, SSM017, SSM019, SSM031, SSM067, SSM044, SSM086, SSM068, SSM081, SSM040, SSM072, SSM082, SSM020, SSM016, SSM005, SSM080, SSM037, SSM077, SSM076, SSM022, SSM070, SSM095, SSM025, SSM004, SSM099, SSM043, SSM052, SSM098
Known GenesPTPRN2
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2735932
Frequency
Sample Size96
Observed Gain0
Observed Loss51
Observed Complex0
Frequencyn/a


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