Variant Details

Variant: esv2735219

Internal ID

9969549

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Outer	chr7:138615351..138615720	hg38	UCSC Ensembl
Outer	chr7:138300096..138300465	hg19	UCSC Ensembl

Cytoband

7q34

Allele length

Assembly	Allele length
hg38	370
hg19	370

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv6964162, essv6919226, essv6915368, essv6952268, essv6802835, essv6902719, essv6830511, essv6897023, essv6680727, essv6740299, essv6828498, essv6798531, essv6975430, essv6763953, essv6705359, essv6767823, essv6930828, essv6904054, essv6667750, essv6757628, essv6890833, essv6774893, essv6976928, essv6893863, essv6734600, essv6855766, essv6923417, essv6771163, essv6746193, essv6790882, essv6841581, essv6969776, essv6957608, essv6948175, essv6782559, essv6778559, essv6731331, essv6818652, essv6935108, essv6749000, essv6931784, essv6884497, essv6911672, essv6731221, essv6715863, essv6876006, essv6737230, essv6964308, essv6760303, essv6845241, essv6927128, essv6811601, essv6743414, essv6873052, essv6765229

Samples

SSM059, SSM008, SSM027, SSM024, SSM064, SSM065, SSM087, SSM013, SSM009, SSM073, SSM050, SSM002, SSM028, SSM092, SSM084, SSM021, SSM047, SSM018, SSM061, SSM029, SSM026, SSM017, SSM019, SSM003, SSM067, SSM001, SSM033, SSM066, SSM085, SSM068, SSM081, SSM040, SSM020, SSM007, SSM015, SSM078, SSM016, SSM053, SSM076, SSM010, SSM091, SSM055, SSM070, SSM095, SSM025, SSM004, SSM099, SSM043, SSM052, SSM098, SSM049, SSM056, SSM030, SSM063, SSM012

Known Genes

SVOPL

Method

Sequencing

Analysis

Breakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads

Platform

Illumina HiSeq 2000

Comments

Reference

Wong_et_al_2012b

Pubmed ID

23290073

Accession Number(s)

esv2735219

Frequency

Sample Size	96
Observed Gain	0
Observed Loss	55
Observed Complex	0
Frequency	n/a