Variant Details

Variant: esv2734852

Internal ID

10318488

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Outer	chr7:96438045..96438491	hg38	UCSC Ensembl
Outer	chr7:96067357..96067803	hg19	UCSC Ensembl

Cytoband

7q21.3

Allele length

Assembly	Allele length
hg38	447
hg19	447

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv6939352, essv6701430, essv6837745, essv6805696, essv6751843, essv6778524, essv6890532, essv6790846, essv6930792, essv6899951, essv6963884, essv6765205, essv6911633, essv6690757, essv6705632, essv6865972, essv6861259, essv6845210, essv6904013, essv6667729, essv6676889, essv6919180, essv6841539, essv6802804, essv6957542, essv6731193, essv6798276, essv6786740, essv6855704, essv6727443, essv6712146, essv6834084, essv6719748, essv6771122, essv6681188, essv6740263, essv6902386, essv6730998, essv6975347, essv6767796, essv6754796, essv6746160, essv6873024, essv6698125, essv6915335, essv6828265, essv6884472, essv6680697, essv6931396, essv6684274, essv6952234, essv6974483, essv6948132, essv6818601, essv6875974

Samples

SSM100, SSM036, SSM083, SSM024, SSM046, SSM064, SSM065, SSM087, SSM038, SSM039, SSM013, SSM009, SSM073, SSM074, SSM042, SSM088, SSM002, SSM057, SSM058, SSM092, SSM084, SSM047, SSM069, SSM029, SSM026, SSM089, SSM017, SSM032, SSM003, SSM067, SSM044, SSM001, SSM033, SSM006, SSM085, SSM082, SSM020, SSM007, SSM015, SSM078, SSM016, SSM005, SSM022, SSM010, SSM091, SSM055, SSM070, SSM095, SSM025, SSM034, SSM004, SSM052, SSM030, SSM063, SSM012

Known Genes

Method

Sequencing

Analysis

Breakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads

Platform

Illumina HiSeq 2000

Comments

Reference

Wong_et_al_2012b

Pubmed ID

23290073

Accession Number(s)

esv2734852

Frequency

Sample Size	96
Observed Gain	0
Observed Loss	55
Observed Complex	0
Frequency	n/a