A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2733580



Internal ID10317216
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr6:170171875..170172238hg38UCSC Ensembl
Outerchr6:170487099..170487462hg19UCSC Ensembl
Cytoband6q27
Allele length
AssemblyAllele length
hg38364
hg19364
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6727282, essv6964015, essv6731044, essv6797043, essv6708585, essv6680559, essv6943626, essv6680066, essv6930152, essv6690636, essv6881551, essv6770993, essv6805573, essv6975097, essv6786579, essv6765132, essv6855478, essv6926959, essv6701284, essv6794836, essv6778362, essv6934916, essv6947981, essv6899826, essv6667659, essv6952075, essv6962762, essv6712004, essv6837604, essv6887143, essv6957311, essv6869905
SamplesSSM100, SSM036, SSM083, SSM071, SSM027, SSM024, SSM046, SSM065, SSM087, SSM039, SSM009, SSM074, SSM042, SSM041, SSM023, SSM090, SSM021, SSM047, SSM069, SSM029, SSM096, SSM026, SSM019, SSM094, SSM003, SSM067, SSM033, SSM005, SSM025, SSM004, SSM030, SSM063
Known Genes
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2733580
Frequency
Sample Size96
Observed Gain0
Observed Loss32
Observed Complex0
Frequencyn/a


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