Variant Details

Variant: esv2733563

Internal ID

10317199

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Outer	chr6:170141338..170264567	hg38	UCSC Ensembl
Outer	chr6:170456562..170573655	hg19	UCSC Ensembl

Cytoband

6q27

Allele length

Assembly	Allele length
hg38	123230
hg19	117094

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv6837605, essv6727282, essv6887142, essv6957308, essv6964015, essv6712003, essv6969555, essv6690638, essv6964012, essv6841416, essv6719599, essv6719596, essv6865783, essv6964014, essv6875870, essv6731044, essv6680055, essv6797043, essv6740146, essv6957306, essv6964016, essv6849383, essv6671382, essv6893678, essv6708585, essv6837603, essv6723404, essv6680559, essv6671384, essv6805572, essv6865788, essv6701285, essv6943626, essv6833936, essv6805574, essv6915212, essv6899825, essv6799041, essv6975098, essv6778363, essv6934920, essv6727283, essv6814486, essv6690635, essv6712001, essv6778366, essv6964010, essv6680066, essv6808560, essv6794834, essv6694355, essv6841417, essv6805575, essv6849385, essv6767671, essv6849382, essv6855477, essv6786577, essv6975092, essv6790691, essv6934915, essv6701283, essv6915211, essv6881549, essv6774745, essv6919018, essv6930152, essv6805577, essv6770994, essv6957312, essv6690636, essv6947982, essv6881551, essv6727281, essv6845099, essv6899824, essv6770993, essv6887144, essv6943625, essv6705189, essv6731046, essv6712006, essv6964018, essv6957310, essv6939200, essv6805573, essv6723405, essv6975097, essv6966261, essv6865784, essv6849386, essv6808561, essv6881550, essv6841415, essv6743302, essv6889443, essv6786575, essv6723407, essv6676743, essv6786579, essv6964019, essv6808562, essv6975096, essv6794837, essv6934914, essv6919016, essv6975093, essv6746066, essv6957309, essv6919020, essv6975100, essv6964013, essv6730076, essv6765132, essv6926960, essv6907749, essv6855478, essv6893675, essv6926959, essv6757515, essv6701284, essv6727284, essv6712002, essv6833934, essv6814485, essv6712007, essv6826580, essv6822601, essv6794836, essv6690637, essv6811445, essv6865785, essv6975099, essv6957313, essv6930626, essv6969554, essv6903875, essv6865786, essv6934919, essv6878731, essv6794833, essv6723406, essv6833933, essv6818429, essv6802692, essv6778362, essv6826579, essv6782387, essv6934917, essv6934916, essv6731045, essv6782385, essv6947981, essv6849388, essv6782384, essv6855479, essv6907748, essv6811444, essv6799040, essv6778364, essv6694356, essv6899826, essv6833935, essv6856410, essv6676745, essv6855480, essv6934921, essv6731041, essv6878733, essv6671383, essv6849384, essv6975094, essv6731040, essv6849389, essv6667659, essv6786580, essv6782383, essv6890348, essv6790692, essv6969556, essv6890347, essv6676746, essv6687396, essv6723403, essv6680558, essv6799039, essv6911517, essv6748878, essv6727280, essv6694353, essv6872905, essv6861061, essv6911516, essv6952075, essv6923238, essv6962762, essv6712004, essv6901265, essv6841418, essv6786578, essv6794835, essv6754684, essv6930163, essv6837604, essv6782386, essv6748879, essv6887143, essv6671385, essv6893677, essv6964011, essv6957311, essv6808559, essv6748880, essv6919019, essv6818430, essv6943627, essv6869905, essv6889454, essv6830334, essv6907750, essv6930627, essv6712005

Samples

SSM100, SSM059, SSM036, SSM083, SSM071, SSM027, SSM024, SSM075, SSM045, SSM046, SSM011, SSM064, SSM079, SSM065, SSM087, SSM097, SSM039, SSM013, SSM009, SSM073, SSM093, SSM074, SSM042, SSM088, SSM002, SSM041, SSM023, SSM058, SSM028, SSM092, SSM084, SSM090, SSM021, SSM047, SSM018, SSM069, SSM029, SSM096, SSM026, SSM089, SSM017, SSM019, SSM035, SSM094, SSM032, SSM003, SSM031, SSM067, SSM044, SSM001, SSM014, SSM086, SSM033, SSM066, SSM085, SSM068, SSM081, SSM040, SSM072, SSM082, SSM020, SSM007, SSM015, SSM078, SSM016, SSM053, SSM005, SSM080, SSM037, SSM077, SSM076, SSM022, SSM091, SSM055, SSM070, SSM025, SSM004, SSM052, SSM098, SSM056, SSM030, SSM063, SSM012

Known Genes

LOC154449

Method

Sequencing

Analysis

Breakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads

Platform

Illumina HiSeq 2000

Comments

Reference

Wong_et_al_2012b

Pubmed ID

23290073

Accession Number(s)

esv2733563

Frequency

Sample Size	96
Observed Gain	0
Observed Loss	83
Observed Complex	0
Frequency	n/a