Variant Details

Variant: esv2733348

Internal ID

10316984

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Outer	chr6:168316717..168317977	hg38	UCSC Ensembl
Outer	chr6:168717397..168718657	hg19	UCSC Ensembl

Cytoband

6q27

Allele length

Assembly	Allele length
hg38	1261
hg19	1261

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

dgv1040e201

Supporting Variants

essv6875861, essv6918994, essv6711983, essv6889277, essv6930605, essv6896874, essv6926945, essv6969532, essv6704776, essv6890339, essv6694329, essv6808552, essv6911491, essv6837582, essv6911490, essv6770970, essv6731022, essv6679966, essv6962640, essv6887132, essv6762265, essv6687384, essv6727266, essv6856331, essv6975055, essv6947960, essv6690611, essv6943603, essv6861041, essv6872892, essv6805563, essv6952056, essv6830319, essv6900376, essv6884351, essv6794812, essv6865770, essv6705168, essv6723380, essv6915198, essv6827209, essv6811436, essv6719583, essv6676726, essv6782364, essv6767656, essv6822581, essv6849360, essv6963975, essv6786546, essv6833914, essv6814464, essv6893662, essv6676725, essv6878726, essv6869895

Samples

SSM036, SSM008, SSM083, SSM071, SSM027, SSM024, SSM075, SSM045, SSM046, SSM011, SSM064, SSM079, SSM065, SSM097, SSM093, SSM074, SSM042, SSM088, SSM002, SSM023, SSM028, SSM092, SSM090, SSM047, SSM069, SSM029, SSM096, SSM089, SSM017, SSM019, SSM035, SSM032, SSM044, SSM086, SSM006, SSM068, SSM081, SSM040, SSM082, SSM020, SSM015, SSM016, SSM005, SSM037, SSM077, SSM076, SSM010, SSM091, SSM095, SSM025, SSM004, SSM099, SSM098, SSM012

Known Genes

DACT2

Method

Sequencing

Analysis

Breakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads

Platform

Illumina HiSeq 2000

Comments

Reference

Wong_et_al_2012b

Pubmed ID

23290073

Accession Number(s)

esv2733348

Frequency

Sample Size	96
Observed Gain	0
Observed Loss	54
Observed Complex	0
Frequency	n/a