A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2733008



Internal ID10316644
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr6:158704892..158705317hg38UCSC Ensembl
Outerchr6:159125924..159126349hg19UCSC Ensembl
Cytoband6q25.3
Allele length
AssemblyAllele length
hg38426
hg19426
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv1028e201
Supporting Variantsessv6888999, essv6915169, essv6861022, essv6830296, essv6782329, essv6790626, essv6849322, essv6969492, essv6907721, essv6826538, essv6893645, essv6957216, essv6782330, essv6943571, essv6705150, essv6911468, essv6849323, essv6826537, essv6841377
SamplesSSM088, SSM023, SSM028, SSM084, SSM026, SSM014, SSM086, SSM068, SSM081, SSM040, SSM015, SSM016, SSM080, SSM070, SSM098, SSM012
Known GenesSYTL3
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2733008
Frequency
Sample Size96
Observed Gain0
Observed Loss16
Observed Complex0
Frequencyn/a


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