Variant Details

Variant: esv2732866

Internal ID

9967188

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Outer	chr6:149922276..150024804	hg38	UCSC Ensembl
Outer	chr6:150243412..150345940	hg19	UCSC Ensembl

Cytoband

6q25.1

Allele length

Assembly	Allele length
hg38	102529
hg19	102529

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv6837538, essv6740080, essv6943550, essv6934845, essv6765099, essv6743261, essv6701201, essv6818374, essv6845053, essv6727223, essv6845052, essv6762717, essv6841361, essv6826898, essv6841360, essv6762718, essv6719550, essv6962706, essv6962228, essv6872860, essv6704587, essv6723334, essv6939123, essv6774680, essv6671276, essv6796554, essv6761886, essv6865718, essv6746032, essv6754646, essv6729732, essv6969478, essv6934844, essv6826887, essv6930555, essv6715639, essv6952011, essv6667629, essv6818373, essv6822538, essv6962817, essv6794768, essv6774679, essv6974974, essv6743260, essv6770921, essv6833873, essv6767627, essv6963901, essv6841359, essv6754647, essv6671278, essv6974972, essv6898042, essv6929662, essv6911451, essv6705138, essv6701202

Samples

SSM008, SSM083, SSM071, SSM027, SSM045, SSM046, SSM064, SSM079, SSM065, SSM039, SSM009, SSM002, SSM023, SSM058, SSM028, SSM084, SSM021, SSM029, SSM062, SSM089, SSM003, SSM031, SSM044, SSM001, SSM066, SSM006, SSM085, SSM040, SSM082, SSM020, SSM007, SSM015, SSM078, SSM053, SSM022, SSM010, SSM091, SSM055, SSM025, SSM004, SSM043, SSM052, SSM030, SSM063

Known Genes

RAET1G, RAET1K, RAET1L, ULBP1, ULBP2

Method

Sequencing

Analysis

Breakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads

Platform

Illumina HiSeq 2000

Comments

Reference

Wong_et_al_2012b

Pubmed ID

23290073

Accession Number(s)

esv2732866

Frequency

Sample Size	96
Observed Gain	0
Observed Loss	44
Observed Complex	0
Frequency	n/a