Variant Details

Variant: esv2732755

Internal ID

9967076

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Outer	chr6:136278763..136282572	hg38	UCSC Ensembl
Outer	chr6:136599901..136603710	hg19	UCSC Ensembl

Cytoband

6q23.3

Allele length

Assembly	Allele length
hg38	3810
hg19	3810

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

dgv1017e201

Supporting Variants

essv6929562, essv6884315, essv6869850, essv6786493, essv6790604, essv6903808, essv6903809, essv6826798, essv6774670, essv6704476, essv6887092, essv6802649, essv6872850, essv6872849, essv6952002, essv6899786, essv6881506, essv6869849, essv6719537, essv6790605, essv6841350, essv6837527, essv6929551, essv6923162, essv6943541, essv6676674, essv6930543, essv6814417, essv6723319, essv6782307, essv6947901, essv6794758, essv6962139, essv6884316, essv6798964, essv6727211, essv6855374, essv6962128, essv6729675, essv6705127, essv6878697, essv6939117, essv6705126, essv6701185, essv6849286, essv6865711, essv6754635, essv6805526, essv6899785, essv6830269, essv6849285, essv6671256, essv6875815, essv6893627, essv6918927, essv6730971, essv6947902, essv6782308

Samples

SSM100, SSM083, SSM071, SSM024, SSM045, SSM046, SSM087, SSM039, SSM013, SSM073, SSM093, SSM074, SSM023, SSM058, SSM092, SSM084, SSM090, SSM047, SSM018, SSM069, SSM096, SSM089, SSM017, SSM094, SSM032, SSM003, SSM031, SSM044, SSM086, SSM066, SSM006, SSM068, SSM081, SSM040, SSM072, SSM020, SSM007, SSM077, SSM022, SSM010, SSM091, SSM070, SSM095, SSM025, SSM004, SSM098

Known Genes

BCLAF1

Method

Sequencing

Analysis

Breakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads

Platform

Illumina HiSeq 2000

Comments

Reference

Wong_et_al_2012b

Pubmed ID

23290073

Accession Number(s)

esv2732755

Frequency

Sample Size	96
Observed Gain	0
Observed Loss	46
Observed Complex	0
Frequency	n/a