Variant Details

Variant: esv2732462

Internal ID

10316098

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Outer	chr6:96712321..96712600	hg38	UCSC Ensembl
Outer	chr6:97160197..97160476	hg19	UCSC Ensembl

Cytoband

6q16.1

Allele length

Assembly	Allele length
hg38	280
hg19	280

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv6845017, essv6969443, essv6929274, essv6915126, essv6697969, essv6808489, essv6796176, essv6865664, essv6926871, essv6761564, essv6963826, essv6974887, essv6951974, essv6814387, essv6737015, essv6855324, essv6748806, essv6745994, essv6778262, essv6734406, essv6794726, essv6911411, essv6671195, essv6881476, essv6805495, essv6730941, essv6760093, essv6947870, essv6802622, essv6679310, essv6790578, essv6694219, essv6961851, essv6680459, essv6811379, essv6715594, essv6896818, essv6895709, essv6841326, essv6767602, essv6860946, essv6887059, essv6893594, essv6888510, essv6705094, essv6711906, essv6719501, essv6957108, essv6830233, essv6930505, essv6798927, essv6740034, essv6923134, essv6751650

Samples

SSM008, SSM071, SSM027, SSM024, SSM075, SSM064, SSM087, SSM038, SSM009, SSM073, SSM050, SSM074, SSM042, SSM088, SSM002, SSM057, SSM028, SSM084, SSM047, SSM018, SSM061, SSM029, SSM096, SSM026, SSM089, SSM019, SSM094, SSM003, SSM031, SSM067, SSM044, SSM033, SSM085, SSM081, SSM040, SSM072, SSM020, SSM015, SSM016, SSM005, SSM037, SSM077, SSM076, SSM055, SSM070, SSM025, SSM004, SSM099, SSM043, SSM052, SSM098, SSM049, SSM056, SSM012

Known Genes

Method

Sequencing

Analysis

Breakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads

Platform

Illumina HiSeq 2000

Comments

Reference

Wong_et_al_2012b

Pubmed ID

23290073

Accession Number(s)

esv2732462

Frequency

Sample Size	96
Observed Gain	0
Observed Loss	54
Observed Complex	0
Frequency	n/a