A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2732086



Internal ID9966404
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr6:52769078..52809618hg38UCSC Ensembl
Outerchr6:52633876..52674416hg19UCSC Ensembl
Cytoband6p12.2
Allele length
AssemblyAllele length
hg3840541
hg1940541
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6915094, essv6727134, essv6701100, essv6951926, essv6893551, essv6869768, essv6884254, essv6844971, essv6830196, essv6808441, essv6729020, essv6723256, essv6761142, essv6903739, essv6969395, essv6830195, essv6760051, essv6778222, essv6899723, essv6855388, essv6694180, essv6786419, essv6687263, essv6730905, essv6708462, essv6961396, essv6826431, essv6907585, essv6736970, essv6678866, essv6767556, essv6770848, essv6748762, essv6711861, essv6943457, essv6934746, essv6855250, essv6680414, essv6951924, essv6694179, essv6795710, essv6963759, essv6890238, essv6875740, essv6671133, essv6896782, essv6761154, essv6955594, essv6745949, essv6671134, essv6790533, essv6719456, essv6798883, essv6872779, essv6833804, essv6808440, essv6703943, essv6795698, essv6928795, essv6805455, essv6891709, essv6757411, essv6711862, essv6841279, essv6715549, essv6774610, essv6939034, essv6855249, essv6826220, essv6888044, essv6957037, essv6811330, essv6923094, essv6697923, essv6887026, essv6881433, essv6865611, essv6918850, essv6814340, essv6930459, essv6860888, essv6705050, essv6743189, essv6888055, essv6814339, essv6765036, essv6963760, essv6794674, essv6947815, essv6875743, essv6818240, essv6782234, essv6690482, essv6822456, essv6855377, essv6907583, essv6802581, essv6676592, essv6918848, essv6690483, essv6703932, essv6955483, essv6878638, essv6743190, essv6849160, essv6684006, essv6974809, essv6727135, essv6687262, essv6794673, essv6837451, essv6774611, essv6934745, essv6911361, essv6926831, essv6715548, essv6872780
SamplesSSM100, SSM059, SSM036, SSM008, SSM083, SSM071, SSM027, SSM024, SSM075, SSM045, SSM046, SSM011, SSM064, SSM079, SSM065, SSM087, SSM038, SSM097, SSM039, SSM013, SSM009, SSM073, SSM093, SSM050, SSM074, SSM042, SSM088, SSM002, SSM041, SSM023, SSM028, SSM092, SSM084, SSM090, SSM021, SSM047, SSM018, SSM069, SSM061, SSM029, SSM096, SSM026, SSM089, SSM017, SSM019, SSM035, SSM094, SSM032, SSM003, SSM031, SSM067, SSM044, SSM001, SSM014, SSM086, SSM033, SSM066, SSM006, SSM085, SSM068, SSM081, SSM040, SSM072, SSM082, SSM020, SSM007, SSM015, SSM078, SSM016, SSM053, SSM005, SSM080, SSM037, SSM077, SSM076, SSM022, SSM010, SSM091, SSM055, SSM070, SSM095, SSM025, SSM034, SSM004, SSM099, SSM043, SSM098, SSM056, SSM063, SSM012
Known GenesGSTA1
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2732086
Frequency
Sample Size96
Observed Gain0
Observed Loss90
Observed Complex0
Frequencyn/a


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