Variant Details

Variant: esv2732085

Internal ID

9966403

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Outer	chr6:52752080..52833441	hg38	UCSC Ensembl
Outer	chr6:52616878..52698239	hg19	UCSC Ensembl

Cytoband

6p12.2

Allele length

Assembly	Allele length
hg38	81362
hg19	81362

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv6939034, essv6884254, essv6869768, essv6888032, essv6795698, essv6969394, essv6687261, essv6907585, essv6782234, essv6684006, essv6743189, essv6719454, essv6678855, essv6855365, essv6955483, essv6708461, essv6708462, essv6951925, essv6687263, essv6890238, essv6907583, essv6778220, essv6730903, essv6798882, essv6730905, essv6794674, essv6872778, essv6761154, essv6855377, essv6805455, essv6805453, essv6794673, essv6903738, essv6671133, essv6808439, essv6849159, essv6865611, essv6930458, essv6730904, essv6923093, essv6833804, essv6896781, essv6872781, essv6680414, essv6855388, essv6855249, essv6918849, essv6678866, essv6947815, essv6676591, essv6907586, essv6963760, essv6676592, essv6790531, essv6911360, essv6671135, essv6786419, essv6926831, essv6687262, essv6770848, essv6694178, essv6719455, essv6961407, essv6684005, essv6915094, essv6934746, essv6705050, essv6974809, essv6715548, essv6729031, essv6918850, essv6774611, essv6811330, essv6822456, essv6947814, essv6676590, essv6802580, essv6727133, essv6891820, essv6841278, essv6723255, essv6887025, essv6818240, essv6814339, essv6875740, essv6701100, essv6715547, essv6875743, essv6690480, essv6723256, essv6767556, essv6757411, essv6878639, essv6711860, essv6822455, essv6844971, essv6955594, essv6961385, essv6881432, essv6963758, essv6872779, essv6697923, essv6888044, essv6934745, essv6767555, essv6774607, essv6830196, essv6957036, essv6961396, essv6690482, essv6899724, essv6884255, essv6943456, essv6957035, essv6890237, essv6943457, essv6711861, essv6899725, essv6774608, essv6969395, essv6711862, essv6926829, essv6727134, essv6896782, essv6893551, essv6743190, essv6765036, essv6802581, essv6957037, essv6837451, essv6844970, essv6893550, essv6951926, essv6878638, essv6837452, essv6860888, essv6872780, essv6808440, essv6918848, essv6841279, essv6794672, essv6703943, essv6814340, essv6715549, essv6760051, essv6826431, essv6826209, essv6694179, essv6748762, essv6837450, essv6878637, essv6694180, essv6701098, essv6891709, essv6678844, essv6888055, essv6903739, essv6778222, essv6790533, essv6671134, essv6841277, essv6930459, essv6736970, essv6963759, essv6928795, essv6690483, essv6754556, essv6761142, essv6811329, essv6761131, essv6808441, essv6911361, essv6703932, essv6923094, essv6680413, essv6711859, essv6875741, essv6719456, essv6830194, essv6855250, essv6974808, essv6915093, essv6795710, essv6798883, essv6811331, essv6865612, essv6955372, essv6844969, essv6939033, essv6774610, essv6826220, essv6830195, essv6849160, essv6690481, essv6899723, essv6951924, essv6881433, essv6705049, essv6745949, essv6887026, essv6826430, essv6786420, essv6794671, essv6855251, essv6888021, essv6729020, essv6727135

Samples

SSM010, SSM065, SSM022, SSM007, SSM027, SSM092, SSM013, SSM053, SSM082, SSM086, SSM006, SSM036, SSM055, SSM091, SSM033, SSM084, SSM061, SSM099, SSM042, SSM040, SSM078, SSM043, SSM088, SSM089, SSM090, SSM064, SSM031, SSM035, SSM025, SSM072, SSM020, SSM071, SSM016, SSM001, SSM032, SSM039, SSM024, SSM045, SSM067, SSM094, SSM083, SSM050, SSM097, SSM041, SSM077, SSM005, SSM012, SSM093, SSM100, SSM056, SSM085, SSM017, SSM009, SSM011, SSM066, SSM028, SSM029, SSM003, SSM095, SSM047, SSM073, SSM069, SSM021, SSM002, SSM037, SSM034, SSM063, SSM087, SSM038, SSM046, SSM019, SSM096, SSM023, SSM079, SSM068, SSM044, SSM074, SSM004, SSM075, SSM015, SSM026, SSM014, SSM008, SSM098, SSM018, SSM076, SSM058, SSM059, SSM081, SSM070, SSM080

Known Genes

GSTA1, GSTA2, GSTA5

Method

Sequencing

Analysis

Breakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads

Platform

Illumina HiSeq 2000

Comments

Reference

Wong_et_al_2012b

Pubmed ID

23290073

Accession Number(s)

esv2732085

Frequency

Sample Size	96
Observed Gain	0
Observed Loss	91
Observed Complex	0
Frequency	n/a