A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2731661



Internal ID10315297
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr10:4815505..4815971hg38UCSC Ensembl
Outerchr10:4857697..4858163hg19UCSC Ensembl
Cytoband10p15.1
Allele length
AssemblyAllele length
hg38467
hg19467
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6746557, essv6708898, essv6915829, essv6923949, essv6948698, essv6819250, essv6768687, essv6668033, essv6919789, essv6976469, essv6935736, essv6939965, essv6737631, essv6681257, essv6735687, essv6830975, essv6873423, essv6803235, essv6970405, essv6757974, essv6691300, essv6765551, essv6806114, essv6931448, essv6832310, essv6712697, essv6968440, essv6895965, essv6779111, essv6952858, essv6906118, essv6749410
SamplesSSM059, SSM036, SSM008, SSM024, SSM073, SSM050, SSM074, SSM042, SSM002, SSM028, SSM021, SSM018, SSM029, SSM017, SSM067, SSM033, SSM006, SSM081, SSM020, SSM007, SSM078, SSM016, SSM022, SSM010, SSM091, SSM055, SSM025, SSM004, SSM056, SSM030, SSM063, SSM012
Known Genes
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2731661
Frequency
Sample Size96
Observed Gain0
Observed Loss32
Observed Complex0
Frequencyn/a


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