A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2731545



Internal ID9965863
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr6:8227699..8228008hg38UCSC Ensembl
Outerchr6:8227932..8228241hg19UCSC Ensembl
Cytoband6p24.3
Allele length
AssemblyAllele length
hg38310
hg19310
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6963583, essv6723140, essv6890120, essv6865474, essv6854643, essv6808310, essv6700956, essv6860706, essv6899602, essv6848984, essv6811215, essv6837333, essv6907439
SamplesSSM100, SSM083, SSM027, SSM075, SSM045, SSM011, SSM097, SSM039, SSM088, SSM089, SSM014, SSM086, SSM076
Known Genes
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2731545
Frequency
Sample Size96
Observed Gain0
Observed Loss13
Observed Complex0
Frequencyn/a


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