A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2731484



Internal ID9965802
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr10:3678906..3679695hg38UCSC Ensembl
Outerchr10:3721098..3721887hg19UCSC Ensembl
Cytoband10p15.2
Allele length
AssemblyAllele length
hg38790
hg19790
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6768643, essv6939960, essv6845664, essv6783174, essv6791480, essv6771723, essv6968407, essv6904578, essv6815145, essv6768225, essv6958646, essv6740752, essv6976460, essv6830971, essv6735643, essv6672564, essv6965186, essv6915826, essv6705890, essv6799850, essv6823284, essv6936029, essv6895920, essv6712693, essv6709204, essv6731756, essv6702062, essv6850604, essv6931444, essv6779105, essv6787385, essv6944512, essv6775380, essv6919783, essv6912237, essv6809103, essv6970402, essv6927620, essv6952854, essv6695155, essv6716415, essv6677464, essv6894346
SamplesSSM008, SSM027, SSM075, SSM064, SSM079, SSM065, SSM039, SSM013, SSM042, SSM041, SSM023, SSM028, SSM047, SSM069, SSM029, SSM026, SSM017, SSM019, SSM032, SSM003, SSM031, SSM067, SSM086, SSM066, SSM085, SSM068, SSM081, SSM040, SSM072, SSM020, SSM007, SSM015, SSM016, SSM037, SSM077, SSM022, SSM070, SSM025, SSM004, SSM043, SSM052, SSM098, SSM012
Known Genes
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2731484
Frequency
Sample Size96
Observed Gain0
Observed Loss43
Observed Complex0
Frequencyn/a


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