Variant Details

Variant: esv2731348

Internal ID

9965665

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Outer	chr5:180639141..180639378	hg38	UCSC Ensembl
Outer	chr5:180066141..180066378	hg19	UCSC Ensembl

Cytoband

5q35.3

Allele length

Assembly	Allele length
hg38	238
hg19	238

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv6886923, essv6911208, essv6881316, essv6680293, essv6759520, essv6872634, essv6822351, essv6727632, essv6860682, essv6814218, essv6727026, essv6959618, essv6811205, essv6844803, essv6802478, essv6956816, essv6818071, essv6754434, essv6890101, essv6676436, essv6719299, essv6826271, essv6825009, essv6694046, essv6899594, essv6927152, essv6798724, essv6848949, essv6934587, essv6893393, essv6745863, essv6730769, essv6884122, essv6854510, essv6808302, essv6704890, essv6922945, essv6969247, essv6865448, essv6670961, essv6708312, essv6764921, essv6711724, essv6794537, essv6774516, essv6683905, essv6855070, essv6974598, essv6907417, essv6869594, essv6963538, essv6697839, essv6690318, essv6767417

Samples

SSM100, SSM036, SSM008, SSM071, SSM027, SSM075, SSM046, SSM011, SSM064, SSM079, SSM087, SSM038, SSM097, SSM073, SSM042, SSM088, SSM041, SSM058, SSM028, SSM090, SSM021, SSM047, SSM018, SSM029, SSM096, SSM026, SSM089, SSM094, SSM032, SSM003, SSM031, SSM044, SSM014, SSM086, SSM033, SSM066, SSM085, SSM040, SSM072, SSM007, SSM015, SSM078, SSM080, SSM037, SSM077, SSM076, SSM010, SSM091, SSM055, SSM095, SSM034, SSM004, SSM098, SSM063

Known Genes

FLT4

Method

Sequencing

Analysis

Breakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads

Platform

Illumina HiSeq 2000

Comments

Reference

Wong_et_al_2012b

Pubmed ID

23290073

Accession Number(s)

esv2731348

Frequency

Sample Size	96
Observed Gain	0
Observed Loss	54
Observed Complex	0
Frequency	n/a