A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2731275



Internal ID9965592
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr5:179217579..179218063hg38UCSC Ensembl
Outerchr5:178644580..178645064hg19UCSC Ensembl
Cytoband5q35.3
Allele length
AssemblyAllele length
hg38485
hg19485
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6700930, essv6903617, essv6943241, essv6927118, essv6833662, essv6951756, essv6730766, essv6694035, essv6922940, essv6778064, essv6708310
SamplesSSM039, SSM013, SSM041, SSM023, SSM047, SSM018, SSM003, SSM067, SSM082, SSM037, SSM025
Known GenesADAMTS2
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2731275
Frequency
Sample Size96
Observed Gain0
Observed Loss11
Observed Complex0
Frequencyn/a


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