A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2731096



Internal ID10314732
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr5:172296770..172297057hg38UCSC Ensembl
Outerchr5:171723774..171724061hg19UCSC Ensembl
Cytoband5q35.1
Allele length
AssemblyAllele length
hg38288
hg19288
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6860658, essv6848911, essv6670936, essv6865426, essv6926985, essv6907395, essv6687141, essv6826254
SamplesSSM088, SSM089, SSM035, SSM003, SSM031, SSM014, SSM086, SSM080
Known Genes
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2731096
Frequency
Sample Size96
Observed Gain0
Observed Loss8
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer