Variant Details

Variant: esv2729829

Internal ID

9964144

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Outer	chr10:1438533..1439065	hg38	UCSC Ensembl
Outer	chr10:1480728..1481260	hg19	UCSC Ensembl

Cytoband

10p15.3

Allele length

Assembly	Allele length
hg38	533
hg19	533

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv6939946, essv6944496, essv6791464, essv6681240, essv6827322, essv6702048, essv6927609, essv6771701, essv6779092, essv6879226, essv6834566, essv6919770, essv6912225, essv6775363, essv6768216, essv6672540, essv6850578, essv6687992, essv6787368, essv6795650, essv6842082, essv6727969, essv6915815, essv6720330, essv6887713, essv6856608, essv6931431, essv6695139, essv6731743, essv6724136, essv6691281, essv6830958, essv6838275, essv6894333, essv6811942, essv6970386, essv6948671, essv6799837, essv6965161, essv6684769, essv6904564, essv6823269, essv6705875, essv6809095, essv6935941, essv6763148, essv6976429, essv6819234, essv6815135, essv6958619, essv6716397, essv6783156, essv6923926

Samples

SSM065, SSM022, SSM027, SSM013, SSM082, SSM086, SSM036, SSM033, SSM084, SSM040, SSM078, SSM043, SSM064, SSM031, SSM035, SSM072, SSM020, SSM071, SSM016, SSM039, SSM024, SSM045, SSM067, SSM083, SSM077, SSM062, SSM093, SSM017, SSM066, SSM028, SSM029, SSM003, SSM047, SSM069, SSM037, SSM034, SSM087, SSM046, SSM019, SSM096, SSM023, SSM079, SSM068, SSM044, SSM075, SSM015, SSM026, SSM098, SSM018, SSM076, SSM081, SSM070, SSM080

Known Genes

ADARB2

Method

Sequencing

Analysis

Breakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads

Platform

Illumina HiSeq 2000

Comments

Reference

Wong_et_al_2012b

Pubmed ID

23290073

Accession Number(s)

esv2729829

Frequency

Sample Size	96
Observed Gain	0
Observed Loss	53
Observed Complex	0
Frequency	n/a