Variant Details

Variant: esv2729641

Internal ID

10313277

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Outer	chr5:3499134..3499601	hg38	UCSC Ensembl
Outer	chr5:3499248..3499715	hg19	UCSC Ensembl

Cytoband

5p15.33

Allele length

Assembly	Allele length
hg38	468
hg19	468

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv6958407, essv6823898, essv6914867, essv6907204, essv6969083, essv6922797, essv6711596, essv6811071, essv6925807, essv6701933, essv6777914, essv6781945, essv6748514, essv6683745, essv6792643, essv6943056, essv6722982, essv6786116, essv6726488, essv6875479, essv6956535, essv6869485, essv6886794, essv6719147, essv6736745, essv6963254, essv6860460, essv6690191, essv6883985, essv6742907, essv6680158, essv6745715, essv6865249, essv6911052, essv6805201, essv6730630, essv6808186, essv6726862, essv6918481, essv6762446, essv6974260, essv6933150, essv6951617, essv6872504, essv6930191, essv6885686, essv6947547, essv6854802, essv6896561, essv6754289, essv6833551, essv6938734, essv6715261

Samples

SSM036, SSM027, SSM024, SSM075, SSM045, SSM046, SSM087, SSM009, SSM050, SSM074, SSM042, SSM088, SSM023, SSM058, SSM028, SSM092, SSM090, SSM047, SSM018, SSM069, SSM029, SSM096, SSM062, SSM026, SSM089, SSM017, SSM003, SSM067, SSM044, SSM001, SSM014, SSM033, SSM006, SSM068, SSM082, SSM020, SSM007, SSM015, SSM016, SSM053, SSM076, SSM022, SSM010, SSM091, SSM055, SSM095, SSM025, SSM034, SSM004, SSM099, SSM043, SSM056, SSM012

Known Genes

LINC01019, LOC102467075

Method

Sequencing

Analysis

Breakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads

Platform

Illumina HiSeq 2000

Comments

Reference

Wong_et_al_2012b

Pubmed ID

23290073

Accession Number(s)

esv2729641

Frequency

Sample Size	96
Observed Gain	0
Observed Loss	53
Observed Complex	0
Frequency	n/a