A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2729469



Internal ID9963784
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr5:1276499..1276854hg38UCSC Ensembl
Outerchr5:1276614..1276969hg19UCSC Ensembl
Cytoband5p15.33
Allele length
AssemblyAllele length
hg38356
hg19356
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6956510, essv6676254, essv6918460, essv6829897, essv6969062
SamplesSSM032, SSM017, SSM028, SSM026, SSM081
Known GenesTERT
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2729469
Frequency
Sample Size96
Observed Gain0
Observed Loss5
Observed Complex0
Frequencyn/a


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