A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2729447



Internal ID9963762
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr5:1229786..1229881hg38UCSC Ensembl
Outerchr5:1229901..1229996hg19UCSC Ensembl
Cytoband5p15.33
Allele length
AssemblyAllele length
hg3896
hg1996
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6670651
SamplesSSM031
Known GenesSLC6A18
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2729447
Frequency
Sample Size96
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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