A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2729333



Internal ID10312969
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr5:628290..629238hg38UCSC Ensembl
Outerchr5:628405..629353hg19UCSC Ensembl
Cytoband5p15.33
Allele length
AssemblyAllele length
hg38949
hg19949
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6686984, essv6711555, essv6774347, essv6726830, essv6963192, essv6676229, essv6790212, essv6886766
SamplesSSM027, SSM046, SSM042, SSM096, SSM035, SSM032, SSM066, SSM070
Known GenesCEP72
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2729333
Frequency
Sample Size96
Observed Gain0
Observed Loss8
Observed Complex0
Frequencyn/a


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