A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2729273



Internal ID10312909
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr10:1010102..1010191hg38UCSC Ensembl
Outerchr10:1056042..1056131hg19UCSC Ensembl
Cytoband10p15.3
Allele length
AssemblyAllele length
hg3890
hg1990
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6856604, essv6958606, essv6861915, essv6866657
SamplesSSM087, SSM088, SSM026, SSM089
Known GenesGTPBP4
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2729273
Frequency
Sample Size96
Observed Gain0
Observed Loss4
Observed Complex0
Frequencyn/a


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