A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2728620



Internal ID10312256
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr4:159748523..159749426hg38UCSC Ensembl
Outerchr4:160669675..160670578hg19UCSC Ensembl
Cytoband4q32.1
Allele length
AssemblyAllele length
hg38904
hg19904
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6683650, essv6745636, essv6690092, essv6754212, essv6823177, essv6756943, essv6951510, essv6922702, essv6899372, essv6910938, essv6963053, essv6914758, essv6751300, essv6715130, essv6974070, essv6957551, essv6844622, essv6859042, essv6884786, essv6764757, essv6670498, essv6742824, essv6725632, essv6854636, essv6748446, essv6918360, essv6757133, essv6956344, essv6817716, essv6791966, essv6736661, essv6903380
SamplesSSM100, SSM059, SSM036, SSM008, SSM027, SSM087, SSM013, SSM009, SSM050, SSM002, SSM057, SSM058, SSM018, SSM029, SSM026, SSM017, SSM031, SSM085, SSM007, SSM015, SSM078, SSM016, SSM053, SSM010, SSM055, SSM025, SSM034, SSM004, SSM043, SSM056, SSM063, SSM012
Known Genes
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2728620
Frequency
Sample Size96
Observed Gain0
Observed Loss32
Observed Complex0
Frequencyn/a


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