A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2728017



Internal ID9962329
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr1:248145142..248203175hg38UCSC Ensembl
Outerchr1:248308444..248366477hg19UCSC Ensembl
Cytoband1q44
Allele length
AssemblyAllele length
hg3858034
hg1958034
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6972745, essv6729836, essv6937892, essv6679397, essv6781093, essv6785216, essv6742323, essv6697145, essv6769751, essv6886155, essv6829203, essv6704048, essv6921958, essv6836393, essv6847368, essv6968175, essv6801794, essv6707461, essv6710791, essv6697146, essv6669307, essv6750487, essv6825213, essv6773658, essv6840171, essv6955102, essv6756705, essv6914170, essv6714461, essv6836392, essv6950779, essv6929297, essv6925882, essv6968172, essv6693018, essv6675420, essv6955101, essv6892523, essv6789398, essv6801793, essv6853565, essv6933538, essv6902746, essv6883419, essv6950780, essv6896016, essv6720531, essv6844063, essv6933537, essv6889209, essv6821401, essv6810505, essv6821402, essv6739023, essv6669308, essv6968173, essv6726069, essv6961890, essv6813357, essv6813358, essv6816853, essv6797693, essv6937893, essv6929295, essv6853566, essv6718372, essv6679398, essv6914169, essv6889211, essv6847369, essv6961892, essv6683016, essv6797694, essv6878687, essv6845787, essv6840173, essv6825214, essv6871892, essv6747962, essv6781094, essv6961891, essv6874884, essv6777145, essv6910279, essv6742324, essv6722211, essv6710790, essv6671010, essv6840172
SamplesSSM059, SSM008, SSM083, SSM027, SSM045, SSM046, SSM011, SSM079, SSM065, SSM087, SSM038, SSM097, SSM013, SSM073, SSM042, SSM041, SSM028, SSM092, SSM084, SSM021, SSM047, SSM018, SSM069, SSM029, SSM096, SSM026, SSM019, SSM032, SSM031, SSM067, SSM044, SSM086, SSM033, SSM066, SSM085, SSM068, SSM081, SSM040, SSM072, SSM020, SSM007, SSM015, SSM078, SSM016, SSM053, SSM005, SSM080, SSM037, SSM077, SSM076, SSM022, SSM091, SSM070, SSM095, SSM025, SSM034, SSM099, SSM043, SSM052, SSM098, SSM056, SSM012
Known GenesOR2M2, OR2M3, OR2M5
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2728017
Frequency
Sample Size96
Observed Gain0
Observed Loss62
Observed Complex0
Frequencyn/a


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