A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2728006



Internal ID9962318
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr1:248090605..248281038hg38UCSC Ensembl
Outerchr1:248253907..248444340hg19UCSC Ensembl
Cytoband1q44
Allele length
AssemblyAllele length
hg38190434
hg19190434
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6844063, essv6937891, essv6759232, essv6914169, essv6921959, essv6726068, essv6950780, essv6896015, essv6669306, essv6739024, essv6933539, essv6697146, essv6797694, essv6825213, essv6889211, essv6898786, essv6929297, essv6739023, essv6878687, essv6883421, essv6968175, essv6801794, essv6821401, essv6693018, essv6697145, essv6961891, essv6929295, essv6816853, essv6950779, essv6813356, essv6910279, essv6710791, essv6914170, essv6679398, essv6840172, essv6813358, essv6946701, essv6972746, essv6955101, essv6669308, essv6871893, essv6917656, essv6821400, essv6877833, essv6747962, essv6750487, essv6902746, essv6704048, essv6764329, essv6813357, essv6868893, essv6937893, essv6968172, essv6972745, essv6864223, essv6707460, essv6785216, essv6726069, essv6847370, essv6683016, essv6675419, essv6801793, essv6847369, essv6878676, essv6781094, essv6892523, essv6693017, essv6722211, essv6906328, essv6729836, essv6756705, essv6933537, essv6671010, essv6769751, essv6883419, essv6840173, essv6829203, essv6720520, essv6829202, essv6832784, essv6836393, essv6955102, essv6729835, essv6675420, essv6679397, essv6777145, essv6896016, essv6845776, essv6797692, essv6914168, essv6968173, essv6880589, essv6933538, essv6736155, essv6853566, essv6918629, essv6714460, essv6786510, essv6797693, essv6886155, essv6952117, essv6669307, essv6836392, essv6781093, essv6921958, essv6710790, essv6847368, essv6874884, essv6769752, essv6961890, essv6742323, essv6925881, essv6793534, essv6742324, essv6815265, essv6937892, essv6810505, essv6889209, essv6874885, essv6671021, essv6845787, essv6821402, essv6925882, essv6714461, essv6807556, essv6871892, essv6761985, essv6853567, essv6840171, essv6942032, essv6773658, essv6825214, essv6816855, essv6742322, essv6961892, essv6789398, essv6853565, essv6689459, essv6720531, essv6707461, essv6718371, essv6718372
SamplesSSM065, SSM022, SSM007, SSM027, SSM092, SSM013, SSM053, SSM082, SSM086, SSM036, SSM091, SSM033, SSM084, SSM061, SSM099, SSM042, SSM040, SSM078, SSM043, SSM089, SSM090, SSM031, SSM025, SSM072, SSM020, SSM071, SSM016, SSM032, SSM024, SSM045, SSM067, SSM094, SSM083, SSM050, SSM097, SSM041, SSM077, SSM062, SSM005, SSM012, SSM093, SSM100, SSM056, SSM085, SSM017, SSM009, SSM011, SSM066, SSM028, SSM029, SSM003, SSM095, SSM047, SSM073, SSM069, SSM021, SSM002, SSM037, SSM034, SSM063, SSM087, SSM038, SSM046, SSM019, SSM096, SSM023, SSM079, SSM052, SSM068, SSM044, SSM004, SSM075, SSM015, SSM026, SSM014, SSM008, SSM098, SSM018, SSM076, SSM059, SSM081, SSM070, SSM080
Known GenesOR2L13, OR2M1P, OR2M2, OR2M3, OR2M4, OR2M5, OR2T33
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2728006
Frequency
Sample Size96
Observed Gain0
Observed Loss83
Observed Complex0
Frequencyn/a


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