Variant Details

Variant: esv2727776

Internal ID

9962088

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Outer	chr4:68925036..68925460	hg38	UCSC Ensembl
Outer	chr4:69790754..69791178	hg19	UCSC Ensembl

Cytoband

4q13.2

Allele length

Assembly	Allele length
hg38	425
hg19	425

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv6881055, essv6829738, essv6676034, essv6938505, essv6754134, essv6947347, essv6774203, essv6922613, essv6690007, essv6711403, essv6926406, essv6730422, essv6785913, essv6686830, essv6798351, essv6755943, essv6872359, essv6914692, essv6704562, essv6825888, essv6726660, essv6700507, essv6962888, essv6777709, essv6748378, essv6722804, essv6864998, essv6736594, essv6791288, essv6840798, essv6675020, essv6906968, essv6956171, essv6822499, essv6805050, essv6860204, essv6718927, essv6833356, essv6739525, essv6817563, essv6918373, essv6724920, essv6670305, essv6851276, essv6781741, essv6764701, essv6918258, essv6883808, essv6854475, essv6910863, essv6821986, essv6697581, essv6790026, essv6683552, essv6968843, essv6889746

Samples

SSM036, SSM008, SSM027, SSM024, SSM045, SSM046, SSM011, SSM079, SSM087, SSM038, SSM097, SSM039, SSM009, SSM050, SSM074, SSM042, SSM088, SSM058, SSM028, SSM084, SSM047, SSM018, SSM069, SSM026, SSM089, SSM017, SSM019, SSM035, SSM094, SSM032, SSM031, SSM067, SSM044, SSM001, SSM014, SSM066, SSM068, SSM081, SSM040, SSM072, SSM082, SSM007, SSM015, SSM078, SSM016, SSM005, SSM080, SSM022, SSM010, SSM091, SSM070, SSM034, SSM052, SSM056, SSM063, SSM012

Known Genes

Method

Sequencing

Analysis

Breakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads

Platform

Illumina HiSeq 2000

Comments

Reference

Wong_et_al_2012b

Pubmed ID

23290073

Accession Number(s)

esv2727776

Frequency

Sample Size	96
Observed Gain	0
Observed Loss	56
Observed Complex	0
Frequency	n/a