Variant Details

Variant: esv2726845

Internal ID

9961153

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Outer	chr4:2398669..2398899	hg38	UCSC Ensembl
Outer	chr4:2400396..2400626	hg19	UCSC Ensembl

Cytoband

4p16.3

Allele length

Assembly	Allele length
hg38	231
hg19	231

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv6689903, essv6914580, essv6836861, essv6722700, essv6679870, essv6844468, essv6759579, essv6938403, essv6707893, essv6840680, essv6934069, essv6693570, essv6711290, essv6883781, essv6829655, essv6896346, essv6781631, essv6910759, essv6886516, essv6955952, essv6670133, essv6892957, essv6774111, essv6794061, essv6860073, essv6813802, essv6955991, essv6821866, essv6674343, essv6714959, essv6770254, essv6922896, essv6833245, essv6926304, essv6810845, essv6968725, essv6869252, essv6751151, essv6726548, essv6947227, essv6962720, essv6724210, essv6730318, essv6845820, essv6802150, essv6848179, essv6899186, essv6878172, essv6821843, essv6745472, essv6880959, essv6854337, essv6704472, essv6929846

Samples

SSM100, SSM036, SSM083, SSM071, SSM027, SSM024, SSM045, SSM046, SSM079, SSM065, SSM087, SSM073, SSM093, SSM042, SSM088, SSM002, SSM041, SSM057, SSM028, SSM084, SSM090, SSM021, SSM047, SSM061, SSM096, SSM026, SSM019, SSM094, SSM003, SSM031, SSM086, SSM033, SSM066, SSM085, SSM068, SSM081, SSM040, SSM082, SSM020, SSM007, SSM015, SSM016, SSM005, SSM037, SSM077, SSM076, SSM022, SSM010, SSM055, SSM095, SSM004, SSM099, SSM043, SSM098

Known Genes

ZFYVE28

Method

Sequencing

Analysis

Breakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads

Platform

Illumina HiSeq 2000

Comments

Reference

Wong_et_al_2012b

Pubmed ID

23290073

Accession Number(s)

esv2726845

Frequency

Sample Size	96
Observed Gain	0
Observed Loss	54
Observed Complex	0
Frequency	n/a