A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2726828



Internal ID10310464
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr4:1671229..1671755hg38UCSC Ensembl
Outerchr4:1672956..1673482hg19UCSC Ensembl
Cytoband4p16.3
Allele length
AssemblyAllele length
hg38527
hg19527
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6962717, essv6951321, essv6774110, essv6926302, essv6825761, essv6836860, essv6789895, essv6794059, essv6955988, essv6850165, essv6689901, essv6821863, essv6785784, essv6892953, essv6840678, essv6726546, essv6770251, essv6813800, essv6722697, essv6973705, essv6781629, essv6718826, essv6942656, essv6886514, essv6730316, essv6683436, essv6833242, essv6700417, essv6798233, essv6707891, essv6679868, essv6693567
SamplesSSM036, SSM083, SSM071, SSM027, SSM045, SSM046, SSM011, SSM079, SSM065, SSM039, SSM041, SSM023, SSM084, SSM047, SSM069, SSM029, SSM096, SSM026, SSM019, SSM044, SSM033, SSM066, SSM068, SSM072, SSM082, SSM080, SSM037, SSM077, SSM070, SSM025, SSM034, SSM098
Known GenesFAM53A
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2726828
Frequency
Sample Size96
Observed Gain0
Observed Loss32
Observed Complex0
Frequencyn/a


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