A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2726769



Internal ID9961077
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr4:1240356..1240637hg38UCSC Ensembl
Outerchr4:1234144..1234425hg19UCSC Ensembl
Cytoband4p16.3
Allele length
AssemblyAllele length
hg38282
hg19282
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6942652, essv6736523, essv6781624, essv6821860, essv6718819, essv6845153, essv6742666, essv6817434, essv6813795, essv6777615, essv6910753, essv6804975, essv6755054, essv6764625, essv6854328, essv6912374, essv6829645, essv6789891, essv6762267, essv6767052, essv6722689, essv6955885, essv6707885, essv6922863, essv6955972, essv6962702, essv6693559, essv6848170, essv6807949, essv6745469, essv6869248, essv6711281, essv6951316, essv6751144, essv6850131, essv6886510, essv6790421, essv6892946, essv6860069, essv6906854, essv6714949, essv6794055, essv6675908, essv6798224, essv6759576, essv6724120, essv6903184, essv6922496, essv6757001, essv6947213, essv6968719, essv6914571, essv6878168, essv6686736, essv6754057, essv6739443, essv6825758, essv6896338, essv6774103, essv6844457, essv6679860, essv6689894, essv6770239, essv6836852, essv6748304, essv6733950, essv6973697, essv6667240, essv6704462, essv6875243, essv6938394, essv6926295, essv6833236, essv6730304, essv6880955, essv6883777, essv6872272, essv6918170, essv6785777, essv6821809, essv6726537
SamplesSSM010, SSM065, SSM022, SSM007, SSM027, SSM092, SSM013, SSM053, SSM082, SSM086, SSM036, SSM055, SSM091, SSM033, SSM061, SSM099, SSM042, SSM040, SSM078, SSM043, SSM088, SSM090, SSM064, SSM035, SSM025, SSM072, SSM071, SSM016, SSM057, SSM001, SSM032, SSM024, SSM045, SSM067, SSM094, SSM083, SSM050, SSM041, SSM077, SSM062, SSM093, SSM056, SSM085, SSM017, SSM009, SSM011, SSM066, SSM028, SSM029, SSM003, SSM095, SSM030, SSM047, SSM069, SSM002, SSM037, SSM063, SSM087, SSM046, SSM019, SSM096, SSM023, SSM079, SSM052, SSM068, SSM044, SSM074, SSM004, SSM075, SSM015, SSM026, SSM014, SSM049, SSM008, SSM098, SSM018, SSM058, SSM059, SSM081, SSM070, SSM080
Known GenesCTBP1
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2726769
Frequency
Sample Size96
Observed Gain0
Observed Loss81
Observed Complex0
Frequencyn/a


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