A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2726485



Internal ID9960792
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr1:243338777..243339361hg38UCSC Ensembl
Outerchr1:243502079..243502663hg19UCSC Ensembl
Cytoband1q43
Allele length
AssemblyAllele length
hg38585
hg19585
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6679375, essv6750287, essv6804582, essv6968153, essv6669278, essv6840148, essv6773640, essv6917638, essv6918473, essv6929273, essv6937870, essv6699820, essv6710770, essv6821385, essv6753677, essv6910257, essv6942012, essv6785193, essv6729818
SamplesSSM022, SSM033, SSM084, SSM042, SSM031, SSM020, SSM039, SSM017, SSM066, SSM028, SSM003, SSM047, SSM069, SSM023, SSM079, SSM074, SSM015, SSM008, SSM058
Known GenesSDCCAG8
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2726485
Frequency
Sample Size96
Observed Gain0
Observed Loss19
Observed Complex0
Frequencyn/a


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