A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2725841



Internal ID10309477
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr3:123517880..123518216hg38UCSC Ensembl
Outerchr3:123236727..123237063hg19UCSC Ensembl
Cytoband3q21.1
Allele length
AssemblyAllele length
hg38337
hg19337
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6955822, essv6785668, essv6825658, essv6704370, essv6802065, essv6880878, essv6700308, essv6878101, essv6707799, essv6886426, essv6883702, essv6973534, essv6859941, essv6807863, essv6906759, essv6817323, essv6892860, essv6675810, essv6903088, essv6889547, essv6864733, essv6669967, essv6711189, essv6804896, essv6854181, essv6833144, essv6929727, essv6798105, essv6942517, essv6793938, essv6872188, essv6899096, essv6810770, essv6718722, essv6836744, essv6869166, essv6848025, essv6683349, essv6962539, essv6693452, essv6849320, essv6789785, essv6821760
SamplesSSM100, SSM083, SSM071, SSM027, SSM075, SSM011, SSM079, SSM087, SSM097, SSM039, SSM013, SSM073, SSM093, SSM074, SSM042, SSM088, SSM041, SSM023, SSM090, SSM069, SSM029, SSM096, SSM026, SSM089, SSM094, SSM032, SSM031, SSM044, SSM014, SSM086, SSM040, SSM072, SSM082, SSM020, SSM078, SSM080, SSM037, SSM076, SSM091, SSM070, SSM095, SSM034, SSM098
Known GenesPTPLB
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2725841
Frequency
Sample Size96
Observed Gain0
Observed Loss43
Observed Complex0
Frequencyn/a


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