Variant Details

Variant: esv2725688

Internal ID

10309324

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Outer	chr3:99909911..99910766	hg38	UCSC Ensembl
Outer	chr3:99628755..99629610	hg19	UCSC Ensembl

Cytoband

3q12.1

Allele length

Assembly	Allele length
hg38	856
hg19	856

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv6736436, essv6686634, essv6938279, essv6886407, essv6714826, essv6910646, essv6673399, essv6697411, essv6854147, essv6847985, essv6869151, essv6798086, essv6859914, essv6883688, essv6722578, essv6759491, essv6849120, essv6793922, essv6675792, essv6973494, essv6880862, essv6875161, essv6742585, essv6699343, essv6807849, essv6951188, essv6745370, essv6748207, essv6968593, essv6679752, essv6751045, essv6864711, essv6817296, essv6773996, essv6718703, essv6947109, essv6700280, essv6804875, essv6810755, essv6942499, essv6762195, essv6766971, essv6892846, essv6825634, essv6754075, essv6733871, essv6914475, essv6921873, essv6906739, essv6933946, essv6903076, essv6707784, essv6821044, essv6781495

Samples

SSM008, SSM071, SSM024, SSM075, SSM045, SSM011, SSM064, SSM087, SSM038, SSM039, SSM013, SSM050, SSM074, SSM088, SSM041, SSM057, SSM023, SSM028, SSM092, SSM090, SSM021, SSM061, SSM029, SSM096, SSM062, SSM089, SSM035, SSM094, SSM032, SSM003, SSM044, SSM014, SSM086, SSM033, SSM066, SSM006, SSM068, SSM072, SSM015, SSM078, SSM016, SSM053, SSM005, SSM080, SSM076, SSM022, SSM010, SSM055, SSM095, SSM025, SSM043, SSM098, SSM049, SSM056

Known Genes

CMSS1, FILIP1L, MIR548G

Method

Sequencing

Analysis

Breakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads

Platform

Illumina HiSeq 2000

Comments

Reference

Wong_et_al_2012b

Pubmed ID

23290073

Accession Number(s)

esv2725688

Frequency

Sample Size	96
Observed Gain	0
Observed Loss	54
Observed Complex	0
Frequency	n/a