A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2725672



Internal ID10309308
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr3:98149891..98212394hg38UCSC Ensembl
Outerchr3:97868735..97931238hg19UCSC Ensembl
Cytoband3q11.2
Allele length
AssemblyAllele length
hg3862504
hg1962504
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv777e201
Supporting Variantsessv6679746, essv6817290, essv6742582, essv6904373, essv6849087, essv6880859, essv6773991, essv6754042, essv6754053, essv6675786, essv6711173, essv6875156, essv6762193, essv6789767, essv6669930, essv6929708, essv6872171, essv6955028, essv6699288, essv6836153, essv6723177, essv6821742, essv6697407, essv6955017, essv6770126, essv6756928, essv6723188, essv6955787, essv6880856, essv6762192, essv6922360, essv6777508, essv6739344, essv6756927, essv6726420, essv6872168, essv6889525, essv6817291, essv6854140, essv6955006, essv6933939, essv6922362, essv6810750, essv6798082, essv6753962, essv6820988, essv6798083, essv6699299, essv6689781, essv6739343, essv6686627, essv6777507, essv6938273, essv6844372, essv6918046, essv6844371, essv6722573, essv6926184, essv6821744, essv6904262, essv6951183, essv6820999, essv6820977, essv6789768, essv6679748, essv6711174, essv6922363, essv6793917, essv6745364, essv6833122, essv6686628, essv6759489, essv6962508, essv6770124, essv6789421, essv6700276, essv6942492, essv6904151, essv6817292, essv6926186, essv6875157, essv6736433, essv6753961, essv6733870, essv6697406, essv6951182, essv6722572, essv6836487, essv6886404, essv6813673, essv6699310, essv6754030, essv6878084, essv6875158, essv6793916, essv6723199, essv6793915, essv6804870, essv6942489, essv6889524, essv6714818, essv6914469, essv6707778, essv6686629, essv6883683, essv6833120, essv6933942, essv6753959, essv6785641, essv6878085, essv6714819, essv6722574, essv6914470, essv6883684, essv6770125, essv6781490, essv6878083, essv6810748, essv6955788, essv6689784, essv6813674, essv6785642, essv6756929, essv6918047, essv6789410, essv6781491, essv6675788, essv6938272, essv6918044, essv6714822, essv6854142, essv6942491, essv6773990, essv6804868, essv6679747, essv6854143, essv6836376, essv6880858, essv6929705, essv6745366
SamplesSSM059, SSM036, SSM008, SSM071, SSM027, SSM045, SSM046, SSM011, SSM079, SSM065, SSM087, SSM038, SSM097, SSM039, SSM009, SSM093, SSM050, SSM074, SSM042, SSM002, SSM041, SSM023, SSM058, SSM092, SSM021, SSM018, SSM069, SSM061, SSM096, SSM062, SSM026, SSM017, SSM019, SSM035, SSM094, SSM032, SSM031, SSM067, SSM001, SSM033, SSM066, SSM006, SSM085, SSM068, SSM072, SSM082, SSM020, SSM007, SSM078, SSM016, SSM053, SSM077, SSM076, SSM022, SSM010, SSM091, SSM055, SSM070, SSM095, SSM025, SSM004, SSM043, SSM052, SSM049
Known GenesOR5H14, OR5H15
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2725672
Frequency
Sample Size96
Observed Gain0
Observed Loss64
Observed Complex0
Frequencyn/a


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