A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2725551



Internal ID9959857
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr1:236714746..236714972hg38UCSC Ensembl
Outerchr1:236878046..236878272hg19UCSC Ensembl
Cytoband1q43
Allele length
AssemblyAllele length
hg38227
hg19227
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6773630, essv6699806, essv6718344, essv6821373, essv6825186, essv6906303, essv6669263, essv6847333, essv6675393, essv6918351, essv6883399, essv6898774, essv6726037, essv6859426, essv6955055, essv6804570, essv6686324, essv6813330, essv6810483, essv6853526, essv6864196, essv6942004, essv6707433, essv6670798, essv6729811, essv6697130, essv6785182, essv6892497
SamplesSSM086, SSM088, SSM089, SSM031, SSM035, SSM032, SSM039, SSM041, SSM077, SSM005, SSM100, SSM066, SSM003, SSM095, SSM047, SSM069, SSM087, SSM038, SSM046, SSM023, SSM079, SSM044, SSM074, SSM026, SSM014, SSM098, SSM076, SSM080
Known GenesACTN2
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2725551
Frequency
Sample Size96
Observed Gain0
Observed Loss28
Observed Complex0
Frequencyn/a


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