Variant Details

Variant: esv2724892

Internal ID

9959194

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Outer	chr3:10008967..11913136	hg38	UCSC Ensembl
Outer	chr3:10050651..11954610	hg19	UCSC Ensembl

Cytoband

3p25.2

Allele length

Assembly	Allele length
hg38	1904170
hg19	1903960

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

dgv762e201

Supporting Variants

essv6962394, essv6781427, essv6896202, essv6892771, essv6745312, essv6926124, essv6951094, essv6886353, essv6831597, essv6788855, essv6730101, essv6854028, essv6804815, essv6777451, essv6859814, essv6813608, essv6840481, essv6700184, essv6921195, essv6906652, essv6726350, essv6785564, essv6718644, essv6954406, essv6921173, essv6906653, essv6955642, essv6726348, essv6899022, essv6833058, essv6789697, essv6921162, essv6903006, essv6848387, essv6892772, essv6807783, essv6962393, essv6864610, essv6718641, essv6875101, essv6714750, essv6813609, essv6859810, essv6781428, essv6942401, essv6825544, essv6968512, essv6914415, essv6962391, essv6745313, essv6777450, essv6722493, essv6859813, essv6733818, essv6962398, essv6864607, essv6926123, essv6875103, essv6847844, essv6726352, essv6693355, essv6707707, essv6789696, essv6820376, essv6697358, essv6745315, essv6726354, essv6962392, essv6869101, essv6798006, essv6704291, essv6955643, essv6820364, essv6889462, essv6689726, essv6878028, essv6793836, essv6922282, essv6742533, essv6669807, essv6922280, essv6722491, essv6711090, essv6929639, essv6745314, essv6942402, essv6922281, essv6859816, essv6968511, essv6864608, essv6926122, essv6773927, essv6875100, essv6669804, essv6693353, essv6906650, essv6973336, essv6951092, essv6917967, essv6798007, essv6714747, essv6917965, essv6804814, essv6730103, essv6836669, essv6669805, essv6683267, essv6781429, essv6962397, essv6669806, essv6875102, essv6793838, essv6773926, essv6669808, essv6854029, essv6833057, essv6881298, essv6829477, essv6833056, essv6789695, essv6726351, essv6813612, essv6711089, essv6821675, essv6707706, essv6938192, essv6825547, essv6954417, essv6714748, essv6847845, essv6892774, essv6810696, essv6798008, essv6759432, essv6762147, essv6714751, essv6892773, essv6804813, essv6844314, essv6748162, essv6748161, essv6883629, essv6679670, essv6817191, essv6954428, essv6722490, essv6938191, essv6667150, essv6880792, essv6817190, essv6722698, essv6730104, essv6926121, essv6872111, essv6836668, essv6739283, essv6899023, essv6785563, essv6753907, essv6825542, essv6770058, essv6955641, essv6947021, essv6718642, essv6955644, essv6711086, essv6859815, essv6793837, essv6847847, essv6810695, essv6933857, essv6881287, essv6864611, essv6859808, essv6689725, essv6793835, essv6753287, essv6714749, essv6962395, essv6825546, essv6700183, essv6753298, essv6880790, essv6889463, essv6726349, essv6914416, essv6864606, essv6798005, essv6910579, essv6877486, essv6942400, essv6693356, essv6667149, essv6770059, essv6973335, essv6686567, essv6825545, essv6711087, essv6917966, essv6880791, essv6968510, essv6929638, essv6829479, essv6973340, essv6889464, essv6722492, essv6829478, essv6813611, essv6722489, essv6753909, essv6886351, essv6878029, essv6698899, essv6736380, essv6968509, essv6847848, essv6973338, essv6973337, essv6730102, essv6683268, essv6859817, essv6910580, essv6951093, essv6675706, essv6859812, essv6793834, essv6801994, essv6698888, essv6753309, essv6933858, essv6933856, essv6921184, essv6844313, essv6847846, essv6739282, essv6886354, essv6947020, essv6880793, essv6820387, essv6854031, essv6753910, essv6942399, essv6859811, essv6973341, essv6801995, essv6669803

Samples

SSM100, SSM036, SSM008, SSM083, SSM071, SSM027, SSM024, SSM075, SSM045, SSM046, SSM011, SSM079, SSM065, SSM087, SSM038, SSM097, SSM039, SSM013, SSM009, SSM073, SSM093, SSM050, SSM074, SSM042, SSM088, SSM002, SSM041, SSM023, SSM058, SSM028, SSM092, SSM084, SSM090, SSM021, SSM047, SSM018, SSM069, SSM061, SSM029, SSM096, SSM062, SSM026, SSM089, SSM017, SSM019, SSM035, SSM094, SSM032, SSM003, SSM031, SSM067, SSM044, SSM001, SSM014, SSM086, SSM033, SSM066, SSM006, SSM085, SSM068, SSM081, SSM040, SSM072, SSM082, SSM020, SSM007, SSM015, SSM078, SSM016, SSM053, SSM080, SSM037, SSM077, SSM076, SSM022, SSM010, SSM091, SSM055, SSM070, SSM095, SSM025, SSM034, SSM004, SSM099, SSM043, SSM052, SSM098, SSM049, SSM056, SSM030, SSM012

Known Genes

ATG7, ATP2B2, BRK1, CIDECP, FANCD2, FANCD2OS, GHRL, GHRLOS, HRH1, IRAK2, LINC00606, LINC00852, LOC401052, MIR885, SEC13, SLC6A1, SLC6A11, SLC6A1-AS1, TAMM41, TATDN2, VGLL4, VHL

Method

Sequencing

Analysis

Breakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads

Platform

Illumina HiSeq 2000

Comments

Reference

Wong_et_al_2012b

Pubmed ID

23290073

Accession Number(s)

esv2724892

Frequency

Sample Size	96
Observed Gain	0
Observed Loss	91
Observed Complex	0
Frequency	n/a