Variant Details

Variant: esv2724820

Internal ID

10308456

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Outer	chr3:3831483..3831889	hg38	UCSC Ensembl
Outer	chr3:3873167..3873573	hg19	UCSC Ensembl

Cytoband

3p26.2

Allele length

Assembly	Allele length
hg38	407
hg19	407

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv6836662, essv6848309, essv6817183, essv6759426, essv6801989, essv6883621, essv6829470, essv6910572, essv6722610, essv6700174, essv6821668, essv6704285, essv6766905, essv6722482, essv6880784, essv6844305, essv6697349, essv6922269, essv6764503, essv6756878, essv6777438, essv6748155, essv6933847, essv6864596, essv6693345, essv6962382, essv6789685, essv6679664, essv6788777, essv6773918, essv6947013, essv6899017, essv6770048, essv6973323, essv6804805, essv6726338, essv6718634, essv6807775, essv6785557, essv6955627, essv6942388, essv6968500, essv6793823, essv6813597, essv6921106, essv6951082, essv6847833, essv6914405, essv6753165, essv6903001, essv6938181, essv6854017, essv6886342, essv6833049, essv6810691, essv6797995, essv6859802

Samples

SSM100, SSM059, SSM008, SSM083, SSM071, SSM027, SSM024, SSM075, SSM045, SSM046, SSM011, SSM064, SSM079, SSM065, SSM087, SSM038, SSM039, SSM013, SSM009, SSM073, SSM074, SSM088, SSM023, SSM028, SSM021, SSM018, SSM069, SSM061, SSM029, SSM096, SSM026, SSM089, SSM094, SSM003, SSM067, SSM044, SSM086, SSM033, SSM066, SSM085, SSM081, SSM040, SSM072, SSM082, SSM007, SSM015, SSM078, SSM016, SSM037, SSM077, SSM076, SSM022, SSM070, SSM095, SSM025, SSM056, SSM063

Known Genes

LRRN1

Method

Sequencing

Analysis

Breakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads

Platform

Illumina HiSeq 2000

Comments

Reference

Wong_et_al_2012b

Pubmed ID

23290073

Accession Number(s)

esv2724820

Frequency

Sample Size	96
Observed Gain	0
Observed Loss	57
Observed Complex	0
Frequency	n/a