A curated catalogue of human genomic structural variation




Variant Details

Variant: esv27246



Internal ID11044479
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr11:89231327..89234736hg38UCSC Ensembl
Innerchr11:88964495..88967904hg19UCSC Ensembl
Innerchr11:88604143..88607552hg18UCSC Ensembl
Cytoband11q14.3
Allele length
AssemblyAllele length
hg383410
hg193410
hg183410
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv15714
SamplesNA18861, NA19114, NA19257, NA18508, NA11995, NA18916, NA07045, NA12239, NA18502, NA18907, NA18909, NA19099, NA19240
Known GenesTYR
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv27246
Frequency
Sample Size40
Observed Gain0
Observed Loss13
Observed Complex0
Frequencyn/a


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