A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2724584



Internal ID9958886
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr1:230198246..230198708hg38UCSC Ensembl
Outerchr1:230333992..230334454hg19UCSC Ensembl
Cytoband1q42.13
Allele length
AssemblyAllele length
hg38463
hg19463
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6902717, essv6704015, essv6950743, essv6892485, essv6789348, essv6781067, essv6710755, essv6786253, essv6968130, essv6889174, essv6821361, essv6692973, essv6804562, essv6898764, essv6726027, essv6955036, essv6961838, essv6718334, essv6871863
SamplesSSM100, SSM027, SSM046, SSM079, SSM097, SSM013, SSM009, SSM074, SSM042, SSM028, SSM026, SSM044, SSM068, SSM040, SSM037, SSM091, SSM070, SSM025, SSM098
Known GenesGALNT2
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2724584
Frequency
Sample Size96
Observed Gain0
Observed Loss19
Observed Complex0
Frequencyn/a


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