A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2724106



Internal ID9958407
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr1:226978001..226979123hg38UCSC Ensembl
Outerchr1:227165702..227166824hg19UCSC Ensembl
Cytoband1q42.13
Allele length
AssemblyAllele length
hg381123
hg191123
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6946659, essv6686307, essv6878331, essv6789341, essv6941988, essv6793489, essv6929248, essv6864177, essv6918251, essv6813318, essv6804557, essv6816807, essv6845488, essv6836355, essv6906286, essv6714417, essv6847310, essv6946660, essv6853503, essv6816808, essv6679350, essv6785175, essv6968121, essv6844030, essv6699791, essv6697123, essv6781061, essv6910226, essv6785174, essv6710751, essv6773621, essv6722173, essv6847308, essv6955029, essv6689423, essv6793486, essv6886123, essv6682984, essv6718326, essv6692963, essv6868863
SamplesSSM036, SSM083, SSM071, SSM024, SSM045, SSM011, SSM087, SSM038, SSM039, SSM074, SSM042, SSM023, SSM028, SSM090, SSM069, SSM096, SSM026, SSM089, SSM035, SSM003, SSM044, SSM014, SSM086, SSM033, SSM066, SSM085, SSM068, SSM020, SSM015, SSM078, SSM037, SSM077, SSM070, SSM034, SSM043, SSM012
Known GenesADCK3
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2724106
Frequency
Sample Size96
Observed Gain0
Observed Loss36
Observed Complex0
Frequencyn/a


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