A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2723552



Internal ID9957852
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr21:42569113..42570041hg38UCSC Ensembl
Outerchr21:43989223..43990151hg19UCSC Ensembl
Cytoband21q22.3
Allele length
AssemblyAllele length
hg38929
hg19929
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6961380, essv6821097, essv6859084, essv6689196, essv6921630, essv6666820, essv6967808
SamplesSSM027, SSM078, SSM035, SSM017, SSM029, SSM087, SSM026
Known GenesSLC37A1
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2723552
Frequency
Sample Size96
Observed Gain0
Observed Loss7
Observed Complex0
Frequencyn/a


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