A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2722965



Internal ID9957265
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr20:63730990..63731866hg38UCSC Ensembl
Outerchr20:62362342..62363218hg19UCSC Ensembl
Cytoband20q13.33
Allele length
AssemblyAllele length
hg38877
hg19877
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6769217, essv6882999, essv6967344, essv6696593, essv6758834, essv6941370, essv6905779, essv6914263, essv6813654, essv6863512, essv6835784, essv6780576, essv6773062, essv6744659, essv6880158, essv6788759, essv6824574, essv6898308, essv6777376, essv6810082, essv6678780, essv6741841, essv6950098, essv6895490, essv6716532, essv6807080, essv6921236, essv6717766, essv6750336, essv6954283, essv6871405, essv6706967, essv6780423, essv6960892, essv6713861, essv6784580, essv6756255, essv6832211, essv6693576, essv6692392, essv6885707, essv6674677, essv6917026, essv6666325, essv6841198, essv6846649, essv6902175, essv6946852, essv6877378, essv6710294, essv6733102, essv6729236, essv6937210, essv6804183, essv6816245, essv6699366, essv6913599
SamplesSSM010, SSM065, SSM022, SSM027, SSM092, SSM013, SSM053, SSM082, SSM006, SSM036, SSM099, SSM042, SSM040, SSM043, SSM088, SSM090, SSM064, SSM031, SSM025, SSM016, SSM001, SSM032, SSM024, SSM067, SSM094, SSM041, SSM077, SSM005, SSM012, SSM093, SSM056, SSM085, SSM017, SSM009, SSM029, SSM003, SSM095, SSM047, SSM073, SSM069, SSM021, SSM002, SSM037, SSM038, SSM046, SSM079, SSM052, SSM068, SSM074, SSM075, SSM015, SSM026, SSM008, SSM098, SSM058, SSM059, SSM081
Known GenesZGPAT
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2722965
Frequency
Sample Size96
Observed Gain0
Observed Loss57
Observed Complex0
Frequencyn/a


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