A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2722955



Internal ID10306591
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr20:63670206..63670363hg38UCSC Ensembl
Outerchr20:62301559..62301716hg19UCSC Ensembl
Cytoband20q13.33
Allele length
AssemblyAllele length
hg38158
hg19158
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6666324, essv6868305, essv6863511, essv6960890, essv6674675, essv6852713
SamplesSSM088, SSM029, SSM026, SSM089, SSM031, SSM086
Known GenesRTEL1, RTEL1-TNFRSF6B
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2722955
Frequency
Sample Size96
Observed Gain0
Observed Loss6
Observed Complex0
Frequencyn/a


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